研究室セミナー & 今週の輪読

今週の研究室セミナーの文献紹介では,生物制御化学研究室の四年生が下記の論文を紹介しました.
Zheng, K., and Hong, R. (2021). Total synthesis of LC-KA05, the proposed structure of LC-KA05-2, and 2,18-seco-lankacidinol B: A quest to revisit lankacidin biosynthesis. Tetrahedron 88: 132141.

今週の輪読では下記の論文を取り上げました.

2285. Afifi, O.A. et al. (2022). Genome-edited rice deficient in two 4-COUMARATE:COENZYME A LIGASE genes displays diverse lignin alterations. Plant Physiol. 190: 2155–2172.
2286. Jeblick, T. et al. (2023). Botrytis hypersensitive response inducing protein 1 triggers noncanonical PTI to induce plant cell death. Plant Physiol. 191: 125–141.
2287. Yimer, H.Z. et al. (2023). Root-knot nematodes produce functional mimics of tyrosine-sulfated plant peptides. Proc. Natl. Acad. Sci. U. S. A. 120: e2304612120.
2288. Yao, C. et al. (2023). Stemborer-induced rice plant volatiles boost direct and indirect resistance in neighboring plants. New Phytol. 237: 2375–2387.

今週の輪読

2280. Etl, F. et al. (2022). Evidence for the recruitment of florivorous plant bugs as pollinators. Curr. Biol. 32: 4688–4698.e6.
2281. Coelho-Bortolo, T.D.S. et al. (2023). L-DOPA impacts nitrate and ammonium uptake and their assimilation into amino acids by soybean (Glycine max L.) plants. J. Plant Growth Regul. 42: 4870–4884.
2282. Gao, L. et al. (2023). Aboveground herbivory can promote exotic plant invasion through intra- and interspecific aboveground–belowground interactions. New Phytol. 237: 2347–2359.
2283. Zhang, F. et al. (2022). Selenium application enhances the accumulation of flavones and anthocyanins in bread wheat (Triticum aestivum L.) grains. J. Agric. Food Chem. 70: 13431–13444.
2284. Ashraf, M.A. et al. (2023). Allicin decreases phytotxic effects of petroleum hydrocarbons by regulating oxidative defense and detoxification of cytotoxic compounds in wheat. J. Plant Growth Regul. 42: 3632–3649.

5/22-11/10 の輪読

長いことブログ更新をサボってしまいました.この間の輪読で取り上げたのは下記の論文です.
2194. Sun, M. et al. (2022). Osa-miR1320 targets the ERF transcription factor OsERF096 to regulate cold tolerance via JA-mediated signaling. Plant Physiol. 189: 2500–2516.
2195. Sahu, K.P. et al. (2022). Deciphering core phyllomicrobiome assemblage on rice genotypes grown in contrasting agroclimatic zones: implications for phyllomicrobiome engineering against blast disease. Environmental Microbiome 17: 28.
2196. Jäckel, L. et al. (2022). The terminal enzymatic step in piperine biosynthesis is co-localized with the product piperine in specialized cells of black pepper (Piper nigrum L.). Plant J. 111: 731–747.
2197. Yu, H. et al. (2022). Greater chemical signaling in root exudates enhances soil mutualistic associations in invasive plants compared to natives. New Phytol. 236: 1140–1153.
2198. Guo, Q., Major, I.T., Kapali, G., and Howe, G.A. (2022). MYC transcription factors coordinate tryptophan-dependent defence responses and compromise seed yield in Arabidopsis. New Phytol. 236: 132–145.
2199. Liu, H. et al. (2022). Benzoxazines in the root exudates responsible for nonhost disease resistance of maize to Phytophthora sojae. Phytopathology 112: 1537–1544.
2200. Cooper, B., Campbell, K.B., and Garrett, W.M. (2022). Salicylic acid and phytoalexin induction by a bacterium that causes halo blight in beans. Phytopathology 112: 1766–1775.
2201. Karssemeijer, P.N. et al. (2022). Specialist root herbivore modulates plant transcriptome and downregulates defensive secondary metabolites in a brassicaceous plant. New Phytol. 235: 2378–2392.
2202. Serger, E. et al. (2022). The gut metabolite indole-3 propionate promotes nerve regeneration and repair. Nature 607: 585–592.
2203. Liu, M. et al. (2023). Sakuranetin protects rice from brown planthopper attack by depleting its beneficial endosymbionts. Proc. Natl. Acad. Sci. U. S. A. 120: e2305007120.
2204. Thimmappa, R. et al. (2022). Biosynthesis of saponin defensive compounds in sea cucumbers. Nat. Chem. Biol. 18: 774–781.
2205. Kharat, K.R., and Pottathil, R. (2022). Chemically defined elicitors activate priming in tomato seedlings. Plant Signaling Behav. 17: 2095143.
2206. Yao, Z. et al. (2022). NtCOMT1 responsible for phytomelatonin biosynthesis confers drought tolerance in Nicotiana tabacum. Phytochemistry 202: 113306.
2207. Zou, D. et al. (2022). Time-domain-based methyl proton NMR with absolute quantitation ability for targeted metabolomics. Anal. Chem. 94: 10062–10073.
2208. Sheshadri, S.A., Nishanth, M.J., and Simon, B. Melatonin influences terpenoid indole alkaloids biosynthesis and 5′ upstream-mediated regulation of Cell wall Invertase in Catharanthus roseus. J. Plant Growth Regul. in press.
2209. Jia, A. et al. (2022). TIR-catalyzed ADP-ribosylation reactions produce signaling molecules for plant immunity. Science 377: eabq8180.
2210. Huang, S. et al. (2022). Identification and receptor mechanism of TIR-catalyzed small molecules in plant immunity. Science 377: eabq3297.
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2212. Huang, Y.-P., Chen, I.-H., Kao, Y.-S., Hsu, Y.-H., and Tsai, C.-H. (2022). The gibberellic acid derived from the plastidial MEP pathway is involved in the accumulation of Bamboo mosaic virus. New Phytol. 235: 1543–1557.
2213. Immel, S., Köck, M., and Reggelin, M. (2022). NMR-based configurational assignments of natural products: how floating chirality distance geometry calculations simplify gambling with 2N–1 diastereomers. J. Nat. Prod. 85: 1837–1849.
2214. Yoneyama, K., Xie, X., Nomura, T., Yoneyama, K., and Bennett, T. (2022). Supra-organismal regulation of strigolactone exudation and plant development in response to rhizospheric cues in rice. Curr. Biol. 32: 3601–3608.e3.
2215. Wheeldon, C.D., Hamon-Josse, M., Lund, H., Yoneyama, K., and Bennett, T. (2022). Environmental strigolactone drives early growth responses to neighboring plants and soil volume in pea. Curr. Biol. 32: 3593–3600.e3.
2216. Tiwari, R.K. et al. Melatonin-polyamine interplay in the regulation of stress responses in plants. J. Plant Growth Regul. in press.
2217. Alvarenga, D.O., and Rousk, K. (2022). Unraveling host–microbe interactions and ecosystem functions in moss–bacteria symbioses. J. Exp. Bot. 73: 4473–4486.
2218. Wang, Y. et al. (2022). Seed priming with calcium chloride enhances stress tolerance in rice seedlings. Plant Sci. 323: 111381.
2219. Kim, J.H. et al. (2022). Increasing the resilience of plant immunity to a warming climate. Nature 607: 339–344.
2220. Zhu, H., Zhou, H., Ren, Z., and Liu, E. (2022). Control of Magnaporthe oryzae and rice growth promotion by Bacillus subtilis JN005. J. Plant Growth Regul. 41: 2319–2327.
2221. López-Orenes, A., Ferrer, M.A., and Calderón, A.A. (2022). Microwave radiation as an inducer of secondary metabolite production in Drosera rotundifolia in vitro plantlets. J. Nat. Prod. 85: 2104–2109.
2222. Lu, H.-P. et al. (2022). An ABA-serotonin module regulates root suberization and salinity tolerance. New Phytol. 236: 958–973.
2223. Votta, C. et al. (2022). Zaxinone synthase controls arbuscular mycorrhizal colonization level in rice. Plant J. 111: 1688–1700.
2224. Deng, Q.-Q. et al. (2022). Damage of brown planthopper (BPH) Nilaparvata lugens and rice leaf folder (LF) Cnaphalocrocis medinalis in parent plants lead to distinct resistance in ratoon rice. Plant Signaling Behav. 17: 2096790.
2225. Breitel, D. et al. (2021). Metabolic engineering of tomato fruit enriched in L-DOPA. Metabolic Engineering 65: 185–196.
2226. Abadie, C., Lalande, J., and Tcherkez, G. (2022). Exact mass GC-MS analysis: Protocol, database, advantages and application to plant metabolic profiling. Plant Cell Environ. 45: 3171–3183.
2227. Zhang, X. et al. (2022). MAMP-elicited changes in amino acid transport activity contribute to restricting bacterial growth. Plant Physiol. 189: 2315–2331.
2228. Bergman, M.E. et al. (2022). An Arabidopsis GCMS chemical ionization technique to quantify adaptive responses in central metabolism. Plant Physiol. 189: 2072–2090.
2229. Xie, S. et al. (2022). Maize root exudates recruit Bacillus amyloliquefaciens OR2-30 to inhibit Fusarium graminearum infection. Phytopathology® 112: 1886–1893.
2230. Kanda, Y. et al. (2023). BSR1, a rice receptor-like cytoplasmic kinase, positively regulates defense responses to herbivory. International Journal of Molecular Sciences 24: 10395.
2231. Chen, P., Dai, C., Liu, H., and Hou, M. (2022). Identification of key headspace volatile compounds signaling preference for rice over corn in adult females of the rice leaf folder Cnaphalocrocis medinalis. J. Agric. Food Chem. 70: 9826–9833.
2232. Zhong, Y. et al. (2022). Root-secreted bitter triterpene modulates the rhizosphere microbiota to improve plant fitness. Nat. Plants 8: 887–896.
2233. Zhang, F. et al. (2022). Flavonoid metabolic profiles and gene mapping of rice (Oryza sativa L.) purple gradient grain hulls. Rice 15: 43.
2234. Zhao, C.-x. et al. (2022). 1H-NMR-guided isolation of enantiomeric coumarin-monoterpenes with anti-inflammatory activity from Gerbera piloselloides. Phytochemistry 203: 113346.
2235. Wang, B. et al. (2022). Sulforaphane, a secondary metabolite in crucifers, inhibits the oxidative stress adaptation and virulence of Xanthomonas by directly targeting OxyR. Mol. Plant Pathol. 23: 1508–1523.
2236. Kapoor, R. et al. (2022). Stress responsive OsHyPRP16 promoter driven early expression of resistance gene Pi54 potentiate the resistance against Magnaporthe oryzae in transgenic rice. Plant Sci. 324: 111413.
2237. Bindics, J. et al. (2022). Many ways to TOPLESS – manipulation of plant auxin signalling by a cluster of fungal effectors. New Phytol. 236: 1455–1470.
2238. Xiang, Z., Okada, D., Asuke, S., Nakayashiki, H., and Ikeda, K. (2022). Novel insights into host specificity of Pyricularia oryzae and Pyricularia grisea in the infection of gramineous plant roots. Mol. Plant Pathol. 23: 1658–1670.
2239. Shabbir, A. et al. (2022). Magnaporthe oryzae chloroplast targeting endo-β-1,4-xylanase I MoXYL1A regulates conidiation, appressorium maturation and virulence of the rice blast fungus. Rice 15: 44.
2240. Su, Y. et al. (2022). Rational engineering of a synthetic insect-bacterial mutualism. Curr. Biol. 32: 3925–3938.e6.
2241. Dauda, W.P. et al. (2022). Metabolomic analysis of sheath blight disease of rice (Oryza sativa L.) induced by Rhizoctonia solani phytotoxin. Journal of Applied Microbiology 133: 3215–3227.
2242. Ogawa, S. et al. (2022). Strigolactones are chemoattractants for host tropism in Orobanchaceae parasitic plants. Nat. Commun. 13: 4653.
2243. Niu, Y. et al. (2022). Phosphorylation of OsTGA5 by casein kinase II compromises its suppression of defense-related gene transcription in rice. The Plant Cell 34: 3425–3442.
2244. Li, C.-Y. et al. (2022). The sage genome provides insight into the evolutionary dynamics of diterpene biosynthesis gene cluster in plants. Cell Rep. 40: 111236.
2245. Zeng, M. et al. (2022). The mycorrhizal symbiosis alters the plant defence strategy in a model legume plant. Plant Cell Environ. 45: 3412–3428.
2246. Huang, Q., Han, X., Zhang, G., Zhu-Salzman, K., and Cheng, W. (2022). Plant volatiles mediate host selection of Sitodiplosis mosellana (Diptera: Cecidomyiidae) among wheat varieties. J. Agric. Food Chem. 70: 10466–10475.
2247. Lin, P., Crooks, D.R., Linehan, W.M., Fan, T.W.-M., and Lane, A.N. (2022). Resolving enantiomers of 2-hydroxy acids by nuclear magnetic resonance. Anal. Chem. 94: 12286–12291.
2248. Yoshihisa, A. et al. (2022). The rice OsERF101 transcription factor regulates the NLR Xa1-mediated immunity induced by perception of TAL effectors. New Phytol. 236: 1441–1454.
2249. Adolfo, L.M., Burks, D., Rao, X., Alvarez-Hernandez, A., and Dixon, R.A. (2022). Evaluation of pathways to the C-glycosyl isoflavone puerarin in roots of kudzu (Pueraria montana lobata). Plant Direct 6: e442.
2250. Choudhury, S. et al. (2022). Jasmonate mediated inducible accumulation of indole glucosinolates confers resistance against Alternaria blight disease in cruciferous wild species Diplotaxis erucoides. Physiol. Mol. Plant Pathol. 122: 101904.
2251. Wang, J., Zhang, X., Greene, G.H., Xu, G., and Dong, X. (2022). PABP/purine-rich motif as an initiation module for cap-independent translation in pattern-triggered immunity. Cell 185: 3186–3200.e17.
2252. Li, H., and Dickschat, J.S. (2022). Diterpene biosynthesis from geranylgeranyl diphosphate analogues with changed reactivities expands skeletal diversity. Angew. Chem. Int. Ed. 61: e202211054.
2253. Friml, J. et al. (2022). ABP1–TMK auxin perception for global phosphorylation and auxin canalization. Nature 609: 575–581.
2254. Byron, J. et al. (2022). Chiral monoterpenes reveal forest emission mechanisms and drought responses. Nature 609: 307–312.
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2256. Cai, X.-Y. et al. (2022). An epigenetic modifier enhances the generation of anti-phytopathogenic compounds from the endophytic fungus Chaetomium globosporum of Euphorbia humifusa. Phytochemistry 203: 113426.
2257. Grover, S., Puri, H., Xin, Z., Sattler, S.E., and Louis, J. (2022). Dichotomous role of jasmonic acid in modulating sorghum defense against aphids. Mol. Plant-Microbe Interact. 35: 755–767.
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2259. Sun, M. et al. (2022). Naringenin confers defence against Phytophthora nicotianae through antimicrobial activity and induction of pathogen resistance in tobacco. Mol. Plant Pathol. 23: 1737–1750.
2260. Su, L. et al. (2022). MsMYB741 is involved in alfalfa resistance to aluminum stress by regulating flavonoid biosynthesis. Plant J. 112: 756–771.
2261. Yang, J. et al. (2022). SnRK1A-mediated phosphorylation of a cytosolic ATPase positively regulates rice innate immunity and is inhibited by Ustilaginoidea virens effector SCRE1. New Phytol. 236: 1422–1440.
2262. Feng, Q. et al. (2022). Osa-miR160a confers broad-spectrum resistance to fungal and bacterial pathogens in rice. New Phytol. 236: 2216–2232.
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2265. Wang, Z. et al. (2022). AIG2A and AIG2B limit the activation of salicylic acid-regulated defenses by tryptophan-derived secondary metabolism in Arabidopsis. The Plant Cell 34: 4641–4660.
2266. Tang, J. et al. (2022). WRKY53 negatively regulates rice cold tolerance at the booting stage by fine-tuning anther gibberellin levels. The Plant Cell 34: 4495–4515.
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2268. Chen, X. et al. (2023). A highly accumulated secretory protein from cotton bollworm interacts with basic helix–loop–helix transcription factors to dampen plant defense. New Phytol. 237: 265–278.
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2272. Batson, A.M., Gyawali, S., and du Toit, L.J. (2022). Shedding light on races of the spinach Fusarium wilt pathogen, Fusarium oxysporum f. sp. spinaciae. Phytopathology 112: 2138–2150.
2273. Tiedge, K. et al. (2022). Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum). New Phytol. 236: 1393–1408.
2274. Wang, Q. et al. (2022). Glutathione S-transferase interactions enhance wheat resistance to powdery mildew but not wheat stripe rust. Plant Physiol. 190: 1418–1439.
2275. Souleyre, E.J.F. et al. (2022). Alcohol acyl transferase genes at a high-flavor intensity locus contribute to ester biosynthesis in kiwifruit. Plant Physiol. 190: 1100–1116.
2276. Chungloo, D. et al. (2023). Mitigation of water-deficit stress, physio-morphological adaptation, and elevation of andrographolide in Andrographis paniculata using foliar glycine betaine. J. Plant Growth Regul. 42: 6273–6285.
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2278. Li, T. et al. (2022). A Phytophthora capsici RXLR effector manipulates plant immunity by targeting RAB proteins and disturbing the protein trafficking pathway. Mol. Plant Pathol. 23: 1721–1736.
2279. Wang, J. et al. (2022). Betulin, synthesized by PpCYP716A1, is a key endogenous defensive metabolite of peach against aphids. J. Agric. Food Chem. 70: 12865–12877.